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  1. Jalview
  2. JAL-4366

Linked visualisation of Foldseek 3Di MSAs with corresponding 3D structures

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    Details

    • Type: New Feature
    • Status: In Progress
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.3.3
    • Fix Version/s: None
    • Component/s: Structures
    • Labels:
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      Description

      Using Nick Matze's 3diTree as an example:
       https://github.com/nmatzke/3diphy/tree/main/jalview

      Goal(s):
      (1) map alignment colors onto a structure even if the AA codes don't match - assuming 1:1 correspondence
      (2) Provide Martin's 3Di-gecos.jc a default.
      (3) provide a way to switch between and/or link amino acid and 3Di sequences - stretch goal

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Dates

              Created:
              Updated: