Trouble with exporting conservation scores to a file for use in PDF structure

I am probably just not doing it correctly.

I open a multiple sequence alignment in Jalview.

I can see the alignment, and I can see the conservation scores.

I am trying to export the scores for amino acids for one of the proteins in the aligment. I can do the export in File/Export Annotations, and save that file

the information for the scores seems to be in a one line, in feilds of 4 , separated by pipes. But that file is difficult to parse for getting the scores into a format that I could use in Pymol or chimera.

IS there any advice for this?

thanks

ken murphy