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  1. Jalview
  2. JAL-429

read and write phylip files

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.8.2
    • Component/s: file format issue
    • Labels:
      None
    • Mantis ID:
      56809

      Description

      Specification is here:
      http://www.life.umd.edu/labs/delwiche/MSyst/lec/phylip.html

      http://www.molecularevolution.org/si/resources/fileformats/phylip_dna.php
      http://www.molecularevolution.org/si/resources/fileformats/phylip_protein.php

      http://www.ebi.ac.uk/help/formats.html#Phylip

      Non interleaved example structure:

      <number of seqs> <number of cols>
      <10char seq.id><aligned columns>
      .
      .
      . (up to number of seqs)
      <next X cols of first sequence>
      .
      .
      .

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              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: