Details
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Type:
New Feature
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Status: Open
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: 2.11.3.0
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Fix Version/s: 2.12.0
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Component/s: analysis, gui, Scriptable API
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Labels:None
Description
JAL-4159 highlighted the need to have adjustable gap opening and extension parameters when calculating N&W alignments. The defaults should always remain 'Conservative' (12 & 2), but the Java class api needs to allow alternative parameters to be provided.
Suggest enhancements to GUI are based on the new analysis/calculation api introduced in Jalview 2.12.
Suggest enhancements to GUI are based on the new analysis/calculation api introduced in Jalview 2.12.
Attachments
Issue Links
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JAL-4159 PaSiMap inclusion
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- In Progress
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