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  1. Jalview
  2. JAL-4229

off by one in displayed VARNA secondary structure

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.2.7
    • Fix Version/s: 2.12.0
    • Component/s: na, varna
    • Labels:
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      Description

      Import RF00162 and view trimmed alignment 2D structure in VARNA for
      AL596170.1. Enable helix colouring to keep track of location.

      Everything is good until column 20 - then the base pair at that column in the alignment is not present in VARNA. The 3' side at column 65 seems to be similarly off.

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            Assignee:
            Unassigned Unassigned
            Reporter:
            jprocter James Procter
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              Dates

              Created:
              Updated: