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  1. Jalview
  2. JAL-4222

Structure viewer image export can hang when run from command line

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      Creating images from Jmol views of structures via the command line can result in deadlocks or 'near deadlocks' when --gui is passed.

      This command more-or-less-reliably deadlocks on OSX/12.6.6
      java -jar build/libs/jalview-all-TEST-j11.jar --gui --open=./examples/test_fab41.result/sample.a2m --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureimage=test/jalview/bin/argparser/testfiles/structureimage1.png --open=./examples/test_fab41.result/sample.a2m --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureimage=test/jalview/bin/argparser/testfiles/structureimage2.png --structureimagescale=1.5 --open=./examples/test_fab41.result/sample.a2m --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureimage=test/jalview/bin/argparser/testfiles/structureimage3.png --structureimagescale=2.0

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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