Details
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Type: Bug
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Status: Closed
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Priority: Critical
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Resolution: Cannot Reproduce
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Affects Version/s: 2.11.3.0
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Fix Version/s: 2.11.3.0
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Component/s: Command Line Interface, Structures, Test suite
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Labels:
Description
Creating images from Jmol views of structures via the command line can result in deadlocks or 'near deadlocks' when --gui is passed.
This command more-or-less-reliably deadlocks on OSX/12.6.6
java -jar build/libs/jalview-all-TEST-j11.jar --gui --open=./examples/test_fab41.result/sample.a2m --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureimage=test/jalview/bin/argparser/testfiles/structureimage1.png --open=./examples/test_fab41.result/sample.a2m --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureimage=test/jalview/bin/argparser/testfiles/structureimage2.png --structureimagescale=1.5 --open=./examples/test_fab41.result/sample.a2m --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureimage=test/jalview/bin/argparser/testfiles/structureimage3.png --structureimagescale=2.0
This command more-or-less-reliably deadlocks on OSX/12.6.6
java -jar build/libs/jalview-all-TEST-j11.jar --gui --open=./examples/test_fab41.result/sample.a2m --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureimage=test/jalview/bin/argparser/testfiles/structureimage1.png --open=./examples/test_fab41.result/sample.a2m --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureimage=test/jalview/bin/argparser/testfiles/structureimage2.png --structureimagescale=1.5 --open=./examples/test_fab41.result/sample.a2m --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureimage=test/jalview/bin/argparser/testfiles/structureimage3.png --structureimagescale=2.0
Attachments
Issue Links
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JAL-4217 2.11.3 develop build hanging in tests..
- Reopened
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