Details
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Type:
New Feature
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Status: Open
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: 3.0
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Component/s: Feature Request, file format issue, renderer
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Labels:None
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Mantis ID:56582
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Epic Link:
Description
Requested by 'FFenics' (Ali) :
For each sequence in an alignment, I would quite like to change the colour of the font of the individual amino acid according to a particular 'function', and then change the colour of the boxes in the alignment according to a user defined conservation score. Is this possible, or can you think of an alternative?
At the moment, I have the functional annotation information for each residue for a given protein sequence stored in a database and then use DAS to retrieve that info using Jalview as a client.
****** ADDITIONAL INFORMATION ******
replied that this isn't currently possible but will look in to it. In principle, the 'new' rendering engine/styles model should allow multiple annotation shading, but currently (ie. in 2.4.1) features are overlaid onto the alignment on top of any existing shading.
For each sequence in an alignment, I would quite like to change the colour of the font of the individual amino acid according to a particular 'function', and then change the colour of the boxes in the alignment according to a user defined conservation score. Is this possible, or can you think of an alternative?
At the moment, I have the functional annotation information for each residue for a given protein sequence stored in a database and then use DAS to retrieve that info using Jalview as a client.
****** ADDITIONAL INFORMATION ******
replied that this isn't currently possible but will look in to it. In principle, the 'new' rendering engine/styles model should allow multiple annotation shading, but currently (ie. in 2.4.1) features are overlaid onto the alignment on top of any existing shading.
