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  1. Jalview
  2. JAL-420

allow 'multichannel' annotation display using both text colour and background colour for different information

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      Requested by 'FFenics' (Ali) :

      For each sequence in an alignment, I would quite like to change the colour of the font of the individual amino acid according to a particular 'function', and then change the colour of the boxes in the alignment according to a user defined conservation score. Is this possible, or can you think of an alternative?

      At the moment, I have the functional annotation information for each residue for a given protein sequence stored in a database and then use DAS to retrieve that info using Jalview as a client.


      ****** ADDITIONAL INFORMATION ******

      replied that this isn't currently possible but will look in to it. In principle, the 'new' rendering engine/styles model should allow multiple annotation shading, but currently (ie. in 2.4.1) features are overlaid onto the alignment on top of any existing shading.

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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