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  1. Jalview
  2. JAL-4132

Some Newick files cause Exception during parse

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.2.6
    • Fix Version/s: None
    • Component/s: trees
    • Labels:
      None
    • Urgency:
      Urgent

      Description

      See https://discourse.jalview.org/t/problem-load-tree-file-null/1956
      Bug reported by user cccjon of a particular Newick tree file causing an Exception:

      java.io.IOException: NewickFile: Can't parse bootstrap value at position 65 ( ((((2730 )
      at jalview.io.NewickFile.parse(NewickFile.java:607)

      when attempting to parse.
      The file is attached.

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            Assignee:
            jprocter James Procter
            Reporter:
            soares Ben Soares
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              Dates

              Created:
              Updated: