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  1. Jalview
  2. JAL-4116

PDB structures slow to view when Jalview Java console is open

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.11.2.6, 2.11.3
    • Fix Version/s: 2.11.2.7, 2.11.3.0
    • Component/s: None
    • Labels:
      None
    • Sprint:
      2.11.3.0 release

      Description

      Viewing a 3D structure for a Uniprot sequence seems to result in a whole bunch of messages from the DBRefUtils machinery like:
      Warning: Couldn't promote dbref EC:3.4.21.5 for sequence THRB_HUMAN
      Warning: Couldn't promote dbref EMBL:M17262 for sequence THRB_HUMAN

      This is probably due to the 'improvements' to logging added along side JAL-2353's patch to the way Uniprot xrefs are resolved.

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Dates

              Created:
              Updated:
              Resolved: