Details
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Type:
Bug
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Status: Closed
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Priority:
Major
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Resolution: Fixed
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Affects Version/s: 2.11.2.4
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Component/s: data retrieval services
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Labels:None
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Environment:The version above is a lie, since I'm using Ben's special build '12:10:41 31 August 2022 from Source git-commit:92a19874dd', which strangely is not an option...
MacOS 12.6 Monterey
MacBook Pro (14-inch, 2021)
Description
I have a Uniprot record retrieved by accession (P25054) and am attempting to use Calculate->Get Cross-References to retrieve the associated Ensembl sequences.
The record references ENST00000257430.9, ENSP00000257430.4, ENSG00000134982.17, ENST00000508376.6, ENSP00000427089.2.
I presume it is trying to access either the ENST or ENSG entries.
Selecting the 'Get Cross-References' menu seems to have no effect, but monitoring the console shows:
Response code 400
Response code 400
Response code 400
Response code 400
# Adding 4 ids back to queries list for searching again (ENSEMBL)
I've attached a project which hopefully demonstrates the problem.
The record references ENST00000257430.9, ENSP00000257430.4, ENSG00000134982.17, ENST00000508376.6, ENSP00000427089.2.
I presume it is trying to access either the ENST or ENSG entries.
Selecting the 'Get Cross-References' menu seems to have no effect, but monitoring the console shows:
Response code 400
Response code 400
Response code 400
Response code 400
# Adding 4 ids back to queries list for searching again (ENSEMBL)
I've attached a project which hopefully demonstrates the problem.
Attachments
Issue Links
- duplicates
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JAL-2353 ignore sequence version numbers in IDs when resolving database references
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- Closed
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