[JAL-4078] refactor stockholm parser so its quicker for PFAM full import - Jalview

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Type: Improvement
Status: Open
Priority: Major
Resolution: Unresolved
Affects Version/s: None
Fix Version/s: 2.11.3, 2.12
Component/s: file format issue
Labels:
- scalability

Description

The jalview.io.StockholmFile.parse() method isn't particularly efficient.

Try importing PF14604 from PFAM (full) to see how slow it can be..

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Assignee:: James Procter

Reporter:: James Procter

Votes:: 0 Vote for this issue

Watchers:: 1 Start watching this issue

Dates

Created:: 13/Oct/22 11:39 AM

Updated:: 14/Oct/22 4:30 PM