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  1. Jalview
  2. JAL-4060

nightingale style contact prediction track

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
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      Description

      Nightingale's MSA component (https://ebi-webcomponents.github.io/nightingale/#/msa) provides some great contact prediction functionalty:
      - columns are annotated with spots coloured according to strength of contact prediction
      - mousing over a particular spot gives an rChie style arc plot showing columns in contact
      -- selecting a contact fixes the arc plot
      -- columns in contact are highlighted by outline, so the box or letter shading remain visible.
      - An optional threshold can be applied to limit the display of spots and highlighted contacts

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated: