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  1. Jalview
  2. JAL-4030

custom liftover maps

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: genomes, variants
    • Labels:
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      Description

      When Ensembl doesn't provide a reasonable reference, or doesn't support a particular assembly, it's useful to be able to use a custom liftover map provided e.g. as a chain file: https://genome.ucsc.edu/goldenPath/help/chain.html

      1. import/specify liftover map
      2. Allow easy specification of which map to use when importing - e.g. VCF files.

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Dates

              Created:
              Updated: