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  1. Jalview
  2. JAL-402

configurable URL link outs that take many sequence IDs

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.5.1
    • Component/s: gui
    • Labels:
      None
    • Mantis ID:
      55785

      Description

      A range of simple 'one shot' webservices can be accessed (e.g. the envision2 linkin URL : http://www.ebi.ac.uk/enfin-srv/envision2/pages/technicalPage.jsf?conversationContext=3 ) if jalview could compose URLs containing several sequence IDs (e.g. the currently selected sequences) and pass them to the browser.

      ****** ADDITIONAL INFORMATION ******

      This is the subject of an Enfin deliverable.

      Buiding on the existing Database name matched, regex processed dynamic URL model, its basic structure can be modified to allow 'Group URLs' as follows:

      Structure of a GroupURL:

      <stem>(<ProcessedID>[<consecutiveSeparator><ProcessedID>]+)<Terminator>

      One or more unique <ProcessedID> strings are generated by applying the regex to the seuqence ID string or matching database cross-references. These are encoded in a URL with the given <stem> and <Terminator> string plus the new <consecutiveSeparator> string which encodes the separator between each ID (either a comma, whitespace, or some other urlencoded string).

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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                Created:
                Updated: