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  1. Jalview
  2. JAL-4016

fraction of variance explained in PCA

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    • Type: Improvement
    • Status: Open
    • Priority: Minor
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
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      Description

      I was wondering if it was possible to obtain a value for the "fraction of variance explained" for the PCA calculated in Jalview? There seems to be no metric available that describes how well the alignment is described by the different components.

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          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-1262 add scree plot and variance report for PCA components

          • Major - Major loss of function.
          • Open

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              Assignee:
              jprocter James Procter
              Reporter:
              glatslb Adrian Lapthorn
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                Dates

                Created:
                Updated: