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  1. Jalview
  2. JAL-3999

limit database xref discovery to Uniprot when looking up mappings in SIFTS

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: 2.11.2
    • Fix Version/s: 2.11.3
    • Component/s: Structures
    • Labels:
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      Description

      Import the following:

      >1QCF/80-136
      IIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD

      With SIFTS mappings enabled, Jalview will resolve the sequence's ID against Ensembl *after* the 'view'/'add' button on the structure chooser is pressed. In fact, it succeeds, but the Ensembl query takes several seconds, to no reasonable added value (whilst cross references are added, the cross-ref mechanism doesn't quite work correctly either..).

      Need to limit the DB discovery for sifts, and create a follow on issue for problems with resolving 1QCF against Ensembl.

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Created:
              Updated: