Details
-
Type: Improvement
-
Status: Open
-
Priority: Critical
-
Resolution: Unresolved
-
Affects Version/s: 2.11.2
-
Fix Version/s: 2.11.3
-
Component/s: analysis, Scriptable API, sequencefeatures
-
Labels:None
Description
Groovy scripts such as https://www.jalview.org/examples/groovy/visibleFeaturesCounter.groovy do not include counts for complementary features, due to the ColumnCounterSetWorker not making appropriate calls to count complement features if they are enabled for the feature renderer.
This needs a patch along similar lines toJAL-3304. Without it, it is much more difficult to analyse feature distributions at scale in the context of genomic and protein annotation.
This needs a patch along similar lines to