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  1. Jalview
  2. JAL-3982

Mouseover on genomic loci propagated to 2D and 3D structures of transcripts and products

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    Details

    • Type: Improvement
    • Status: Ready for testing
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.4
    • Fix Version/s: 2.12.0
    • Component/s: Structures
    • Labels:
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      Description

      Subtask of JAL-3860
      Import Ensembl e.g. locus, show CrossRefs, and View 3D structures for Protein products (via a 3D Beacons Search).
      Mouse overs on locus sequence should result in labels/highlights on 3D structure.

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          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-3860 propagate mouseover, region highlights and selection events on reference to transcripts and products

          • Blocker - Blocks development and/or testing work, production could not run.
          • In Progress
          depends on

          New Feature - A new feature of the product, which has yet to be developed. JAL-3851 Jalview REST API for Interoperation with Genome Browsers

          • Major - Major loss of function.
          • In Progress
          mentioned on

          GitLab Commit - JAL-3982 highlight any 3D structure mappings for positions mapped via CDS/transcript relationships

          GitLab Commit - JAL-3982 JAL-3860 encapsulate genomic coordinates mapping/liftover logic

            Activity

              People

              Assignee:
              soares Ben Soares
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: