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  1. Jalview
  2. JAL-3976

3D Structure chooser fails to select structures from 3D-beacons and pops up a 'null' dialog

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.11.2.0
    • Fix Version/s: 2.11.2.1
    • Component/s: Structures
    • Labels:
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      Description

      Discovering structures for some uniprot entries result in a dialog popping up with 'null' in the message area. These seem to result from an empty JSON doc being returned by 3d-beacons:

      https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/api/uniprot/summary/P0DTD3.json

      This raises unexpected exceptions:
      java.lang.NullPointerException
      at jalview.gui.structurechooser.TDBResultAnalyser.getFilteredResponse(TDBResultAnalyser.java:134)
      at jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource.selectFirstRankedQuery(ThreeDBStructureChooserQuerySource.java:361)
      at jalview.gui.StructureChooser$7.run(StructureChooser.java:567)
      at java.lang.Thread.run(Thread.java:750)

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated:
              Resolved: