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  1. Jalview
  2. JAL-3963

colour ambiguous nucleotides and report residue statistics in alignment properties

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Trivial
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: analysis, colourschemes, na
    • Labels:
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      Description

      As part of the Scottish daffodil project, it would be useful to be able to (i) colour the ambiguous nucleotide bases in an assembled sequence, (ii) count the number of ambiguous nucleotide bases and give the assembled sequence some sort of quality score.
      KEY:
      R = G or A
      Y = C or T
      M = A or C
      K = G or T
      S = G or C
      W = A or T
      B = not A (C or G or T)
      D = not C (A or G or T)
      H = not G (A or C or T)
      V = not T (A or C or G)
      N = A or C or G or T

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            Assignee:
            Unassigned Unassigned
            Reporter:
            sduce Suzanne Duce
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              Dates

              Created:
              Updated: