Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-3956

Need 'Authoritative Identifier' so an import from AlphaFill 3D-beacons yields multiple 'Cached PDB' files

    XMLWordPrintable

    Details

      Description

      The alphafill.eu service provides alphafold models 'enriched' with ligand structures. Importing from this with the 2.11.2 development version works, but when the 3d-structure chooser is opened after viewing the structure, two entries are shown for the file imported from Alphafill - one with the Alphafill DB identifier, one looking like an AlphaFold identifier (AF-Uniprot-F1).

      Cause: The mmcif file provided via the 3D-beacons api includes the original alphafold database identifier, which confuses the PDBEntry.updateFrom logic which assumes the identifier embedded in the file is meaningful.

        Attachments

          Activity

            People

            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
            Votes:
            0 Vote for this issue
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: