Details
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Type:
Bug
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Status: Open
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: 2.10.5, 2.11.1, 2.11.2.0
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Fix Version/s: None
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Component/s: cds/protein
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Labels:
Description
1. Import example ENA record
2. Calculate->Show Cross-references->Uniprot to view CDS/Protein
3. No Show Cross-references option is offered for Protein view.
Observation from [~gmungoc]: (https://issues.jalview.org/browse/JAL-3749?focusedCommentId=24474&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-24474)
The dbref from protein to CDS is correctly created, but the "Show Cross-References" menu item is suppressed by the line in CrossRef.findXrefSourcesForSequences():
sources.remove(DBRefSource.EMBL); // hack to prevent EMBL xrefs resulting in redundant datasets
Added Oct 2016, see https://issues.jalview.org/browse/JAL-2210?focusedCommentId=16168&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-16168
Probably been like this since Jalview 2.10.0. Could reproduce in 2.10.5.
2. Calculate->Show Cross-references->Uniprot to view CDS/Protein
3. No Show Cross-references option is offered for Protein view.
Observation from [~gmungoc]: (https://issues.jalview.org/browse/JAL-3749?focusedCommentId=24474&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-24474)
The dbref from protein to CDS is correctly created, but the "Show Cross-References" menu item is suppressed by the line in CrossRef.findXrefSourcesForSequences():
sources.remove(DBRefSource.EMBL); // hack to prevent EMBL xrefs resulting in redundant datasets
Added Oct 2016, see https://issues.jalview.org/browse/JAL-2210?focusedCommentId=16168&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-16168
Probably been like this since Jalview 2.10.0. Could reproduce in 2.10.5.