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  1. Jalview
  2. JAL-3931

Structure data files with accessions including ':' and '%' are not supported in Pymol

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.11.2
    • Fix Version/s: 2.11.2.0
    • Component/s: Structures
    • Labels:

      Description

      Filenames of structure files retrieved via 3D beacons/etc are derived from their identifiers. These are also encoded in structure data files (e.g. PDB or mmCIF).

      Pymol complains when files with names including ':' or '%' are imported, so they need to be renamed before import. Otherwise messages like the following appear:
      "Selector-Error: Invalid selection name "3A4zhp.1.A11713814924521180142".
      Q9ZTS2_48-144 % 3A4zhp.1.A11713814924521180142<--"

      The solution is to replace : and % before importing to Pymol.


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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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