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  1. Jalview
  2. JAL-3858

Import and display alphafold predicted alignment error matrices from JSON

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.11.3.0
    • Component/s: file format issue
    • Labels:
      None

      Description

      Alphafold models include an accompanying JSON format matrix which can provide information analogous to contract/coupling matrices, primarily indicating the presence of domain structure.

        Attachments

          Issue Links

          depends on

          New Feature - A new feature of the product, which has yet to be developed. JAL-4138 user preferences and structure chooser controls for automatically showing PAE annotation row along side pLDDT when loading structure from alphafold, and control secondary structure and temp factor display

          • Critical - Crashes, loss of data, severe memory leak.
          • Open

          New Feature - A new feature of the product, which has yet to be developed. JAL-629 create sequence/structure associations and add associated data via command line

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed
          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-3855 Discover and import alphafold2 models and metadata from https://alphafold.ebi.ac.uk/

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed
          mentioned on

          GitLab Commit - JAL-4090 JAL-3858 fix up PAE docs - drop the EBI image example

          GitLab Commit - JAL-4090 update release date to friday 3rd November

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: