Details
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Type:
Bug
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Status: Open
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Priority:
Blocker
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Resolution: Unresolved
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Affects Version/s: 2.11.1.4, 2.11.2.0
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Fix Version/s: 2.11.3
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Component/s: data retrieval services, file format issue
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Labels:None
Description
Import the following - according to the docs (or my memory) we should expect to get Uniprot accessions when importing this stockholm file, but instead the sequence gets a PFAM DBref.
# STOCKHOLM 1.0
#=GS FER1_PEA/1-149 AC P09911
FER1_PEA/1-149 MATT---PALYGTAVSTSFLRTQPMPMSV-TTTKAFSN--GFLGLKT-SLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLTA-
//
# STOCKHOLM 1.0
#=GS FER1_PEA/1-149 AC P09911
FER1_PEA/1-149 MATT---PALYGTAVSTSFLRTQPMPMSV-TTTKAFSN--GFLGLKT-SLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLTA-
//