Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-3846

stockholm format does not guess database name correctly for sequence AC references

    XMLWordPrintable

    Details

      Description

      Import the following - according to the docs (or my memory) we should expect to get Uniprot accessions when importing this stockholm file, but instead the sequence gets a PFAM DBref.

      # STOCKHOLM 1.0
      #=GS FER1_PEA/1-149 AC P09911
      FER1_PEA/1-149 MATT---PALYGTAVSTSFLRTQPMPMSV-TTTKAFSN--GFLGLKT-SLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLTA-
      //

        Attachments

          Activity

            People

            Assignee:
            Unassigned Unassigned
            Reporter:
            jprocter Jim Procter
            Votes:
            0 Vote for this issue
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated: