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  1. Jalview
  2. JAL-3840

Wrong column occupancies on big alignments

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    Details

    • Type: Bug
    • Status: Being tested
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.11.1.4
    • Fix Version/s: 2.11.1.5, 2.11.2
    • Component/s: None
    • Labels:
    • Environment:
      Windows
    • Urgency:
      Urgent

      Description

      On big PFAM alignments, e.g., PF00439, column occupancies are wrong for very low occupancy columns. Occupancy shown while hovering over the occupancy annotation track is wrong, sometimes greater than the number of sequences of the alignment. Also, consensus sequence can't be viewed on those positions because there is a white bar covering part of the amino acid one-letter code, possibly a consequence of the wrong occupancy value.

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            Assignee:
            soares Ben Soares
            Reporter:
            jsutges Javier Sanchez Utges
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              Dates

              Created:
              Updated:
              Resolved: