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  1. Jalview
  2. JAL-3834

Jalview project files could contain bioschemas metadata about the contents of the file

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Minor
    • Resolution: Unresolved
    • Affects Version/s: 2.11.2
    • Fix Version/s: None
    • Component/s: file format issue
    • Labels:
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      Description

      The Jalview project file format is a Jar file, which is a zip file.
      The zip file could contain bioschemas metadata about the contents of the the project file (e.g. metadata about protein IDs in the alignment windows), held in a standard place within zip files that makes it easy for other processes (e.g. repository deposit, RO-Crate inclusion) to extract metadata about the project file. This will increase findability of relevant data/workflows/visualisations stored in Jalview project files.

      After discussions with bioschemas people and RO-Crates people at the Elixir UK Hackathon 2021 (April 14-16) it would seem the following information will be useful:
      https://bioschemas.org/profiles/Protein/0.11-RELEASE/
      https://www.researchobject.org/ro-crate/1.1/appendix/implementation-notes.html#combining-with-other-packaging-schemes

      To find more info from RO-Crates people, see https://www.researchobject.org/ro-crate/community.html

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            Assignee:
            jprocter Jim Procter
            Reporter:
            soares Ben Soares
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              Created:
              Updated: