Details
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Type:
New Feature
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Status: Open
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Priority:
Minor
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Resolution: Unresolved
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Affects Version/s: 2.11.2
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Fix Version/s: None
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Component/s: file format issue
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Labels:None
Description
The Jalview project file format is a Jar file, which is a zip file.
The zip file could contain bioschemas metadata about the contents of the the project file (e.g. metadata about protein IDs in the alignment windows), held in a standard place within zip files that makes it easy for other processes (e.g. repository deposit, RO-Crate inclusion) to extract metadata about the project file. This will increase findability of relevant data/workflows/visualisations stored in Jalview project files.
After discussions with bioschemas people and RO-Crates people at the Elixir UK Hackathon 2021 (April 14-16) it would seem the following information will be useful:
https://bioschemas.org/profiles/Protein/0.11-RELEASE/
https://www.researchobject.org/ro-crate/1.1/appendix/implementation-notes.html#combining-with-other-packaging-schemes
To find more info from RO-Crates people, see https://www.researchobject.org/ro-crate/community.html
The zip file could contain bioschemas metadata about the contents of the the project file (e.g. metadata about protein IDs in the alignment windows), held in a standard place within zip files that makes it easy for other processes (e.g. repository deposit, RO-Crate inclusion) to extract metadata about the project file. This will increase findability of relevant data/workflows/visualisations stored in Jalview project files.
After discussions with bioschemas people and RO-Crates people at the Elixir UK Hackathon 2021 (April 14-16) it would seem the following information will be useful:
https://bioschemas.org/profiles/Protein/0.11-RELEASE/
https://www.researchobject.org/ro-crate/1.1/appendix/implementation-notes.html#combining-with-other-packaging-schemes
To find more info from RO-Crates people, see https://www.researchobject.org/ro-crate/community.html