Details
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Type:
Improvement
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Status: Closed
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Priority:
Major
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Resolution: Fixed
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Affects Version/s: 2.11.1, 2.11.2
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Fix Version/s: 2.11.2.0
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Component/s: data retrieval services, file format issue, na
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Labels:None
Description
ENA record import currently delivers sequences to the alignment verbatim - this makes sense for most ENA records, which are DNA, but not for RNA.
The mol_type="genomic RNA" attribute under the 'source' feature could be use to transliterate ENA records into their source alphabet.. e.g. genomic RNA should trigger a T->U replacement prior to adding to Jalview's dataset.
See e.g. MN908947 - an infamous RNA virus...
The mol_type="genomic RNA" attribute under the 'source' feature could be use to transliterate ENA records into their source alphabet.. e.g. genomic RNA should trigger a T->U replacement prior to adding to Jalview's dataset.
See e.g. MN908947 - an infamous RNA virus...