Details
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Type: Epic
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Status: Closed
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Priority: Major
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Resolution: Won't Fix
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Affects Version/s: 2.12.0
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Fix Version/s: 2.12.0
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Component/s: slivka, web service bug
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Labels:
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Epic Name:slivka-jpred-in-jalview
Description
In Jalview 2.11 and before JPred is called via legacy jws1 code.
* JPred Services for slivka need to be specified for single sequence and alignment based prediction modes
* JPred client code from the jws1 client needs to be rescued and adapted for the refactored web service model introduced in Jalview 2.12.
* Decisions need to be made about:
1. Whether alignment based JPred predictions are run like AACon services - ie as alignment calculations
2. Whether the user is allowed to submit several sequences at once to JPred's sequence based prediction service (which generates a multiple sequence alignment for each input sequence).
* JPred Services for slivka need to be specified for single sequence and alignment based prediction modes
* JPred client code from the jws1 client needs to be rescued and adapted for the refactored web service model introduced in Jalview 2.12.
* Decisions need to be made about:
1. Whether alignment based JPred predictions are run like AACon services - ie as alignment calculations
2. Whether the user is allowed to submit several sequences at once to JPred's sequence based prediction service (which generates a multiple sequence alignment for each input sequence).
Attachments
Issue Links
- depends on
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JAL-3070 Interface based analysis service GUI
- Closed