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  1. Jalview
  2. JAL-3807

Migrate Jalview JPred Client to use Slivka's JPred Services

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    • Epic Name:
      slivka-jpred-in-jalview

      Description

      In Jalview 2.11 and before JPred is called via legacy jws1 code.
      * JPred Services for slivka need to be specified for single sequence and alignment based prediction modes
      * JPred client code from the jws1 client needs to be rescued and adapted for the refactored web service model introduced in Jalview 2.12.
      * Decisions need to be made about:
      1. Whether alignment based JPred predictions are run like AACon services - ie as alignment calculations
      2. Whether the user is allowed to submit several sequences at once to JPred's sequence based prediction service (which generates a multiple sequence alignment for each input sequence).

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              Assignee:
              mmwarowny Mateusz Warowny
              Reporter:
              mmwarowny Mateusz Warowny
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