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  1. Jalview
  2. JAL-3735

Space/time efficient representation of aligned sequences as CIGAR

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    • Type: Task
    • Status: Open
    • Priority: Blocker
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: Datamodel
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      Description

      Operations like JAL-3680 where the next gap or ungapped position is searched for would be quicker if the base Sequence class used a CIGAR representation rather than char[] - it would also be more memory efficient for JAL-2909 - reading bam files :)

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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              Created:
              Updated: