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  1. Jalview
  2. JAL-3705

Protein cross-refs for gene sequence not restored correctly from project

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    Details

    • Type: Bug
    • Status: Ready for testing
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.10.3, 2.11.1.0, 2.11.1.1, 2.11.1.2, 2.11.1.3, 2.11.1.4
    • Fix Version/s: 2.11.2
    • Component/s: cds/protein

      Description

      1) Fetch J03321 from EMBL
      2) Get Cross-References | UNIPROT.
      CDS sequences are CDS|AA91567 to AA91574 (/protein_id in EMBL CDS feature).

      If instead the data is saved to a project file after step 1) and then reloaded to an empty Jalview desktop, CDS sequences are all named CDS|EMBL|J03321.

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          Task - A task that needs to be done. JAL-3724 Enhance crossref test to highlight inconsistencies between crossrefs recovered from restored project and crossrefs recovered from freshly retrieved accessions

          • Major - Major loss of function.
          • Open

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              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated: