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  1. Jalview
  2. JAL-3696

underlying error messages for malformed lines when parsing VCF files are not reported

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 2.11.1.0
    • Fix Version/s: 2.11.1.1, 2.11.2
    • Component/s: None
    • Labels:
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      Description

      Parse errors at specific lines in VCF files result in a detailed positional error message, but when problematic lines are encountered jalview reports:

      Error processing VCF: Format specifier '%s'
      java.util.MissingFormatArgumentException: Format specifier '%s'
      at java.base/java.util.Formatter.format(Formatter.java:2672)

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Updated:
              Resolved: