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  1. Jalview
  2. JAL-3694

JalviewJS as a Jupyter Widget

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    Details

    • Type: Epic
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.1_js
    • Fix Version/s: 2.11.2_js, 2.12.0_js
    • Component/s: jalview-j2s
    • Labels:
      None
    • Epic Name:
      jupyter-jsplugin

      Description

      JalviewJS as a jupyter plugin.

      There are several levels for this epic. Off the top of my head:

      1. View MSA data as an embedded JalviewJS view
      2. Adapt JalviewJS windows and dialogs to work correctly within the output region of a juypter notebook cell.
      3. Allow JalviewJS widget state to be saved and restored so visualisation settings are recovered when the cell is re-executed.
      4. Store interactive downstream analyses as an executable script so they can automatically executed when the cell is re-executed.
      ..
       

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            Assignee:
            soares Ben Soares
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated: