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  1. Jalview
  2. JAL-3639

IntervalStore-v1.1 fails to find RESNUM 0 in 4IM2

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.1.0
    • Fix Version/s: 2.11.1_js
    • Component/s: analysis
    • Labels:
      None
    • Environment:
      Java

      Description

      4IM2 has [GLY-1], [SER0], and IntervalStore finds the first but fails to find the second. FeatureStore line 545.

      features.findOverlaps(0, 0, result);

      If I change that call to (-1,-1,...) or (1,1,...) it is fine. But a RESNUM of 0 fails.

      Test is PDBSequenceFetcherTest

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          depends on

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2007 Use PDBe numbering for sequences extracted from PDB files

          • Major - Major loss of function.
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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              hansonr Bob Hanson
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                Dates

                Created:
                Updated: