Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-3603

Annotation file fails to load from URL in JalviewJS

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.11.2, 2.11.2.0
    • Component/s: jalview-j2s
    • Labels:
      None
    • Environment:
      Jalview-JS/Develop, transpiler 3.2.9-j11.

      Description

      As reported in https://github.com/jalview/jalview-js/issues/6.
      Raised here for traceability.
      Launching JalviewJS with a URL like
      file:///Users/gmcarstairs/git/jalview3/build/jalviewjs/site/jalview_bin_Jalview.html?open examples/uniref50.fa annotations /examples/plantfdx.annotations
      or
      https://builds.jalview.org/artifact/JB-GJB0/shared/build-57/JalviewJS-site/jalview_bin_Jalview.html?open examples/uniref50.fa annotations /examples/plantfdx.annotations
      fails to load the annotations to the alignment correctly.
      Instead the file is processed as Pfam and 'sequences' named 'NO_GRAPH' and 'COLOUR' are added to the alignment.

        Attachments

          Activity

            People

            Assignee:
            gmungoc Mungo Carstairs
            Reporter:
            jprocter Jim Procter
            Votes:
            0 Vote for this issue
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: