Details
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Type:
Bug
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Status: Closed
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Priority:
Major
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Resolution: Fixed
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Affects Version/s: None
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Component/s: jalview-j2s
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Labels:None
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Environment:Jalview-JS/Develop, transpiler 3.2.9-j11.
Description
As reported in https://github.com/jalview/jalview-js/issues/6.
Raised here for traceability.
Launching JalviewJS with a URL like
file:///Users/gmcarstairs/git/jalview3/build/jalviewjs/site/jalview_bin_Jalview.html?open examples/uniref50.fa annotations /examples/plantfdx.annotations
or
https://builds.jalview.org/artifact/JB-GJB0/shared/build-57/JalviewJS-site/jalview_bin_Jalview.html?open examples/uniref50.fa annotations /examples/plantfdx.annotations
fails to load the annotations to the alignment correctly.
Instead the file is processed as Pfam and 'sequences' named 'NO_GRAPH' and 'COLOUR' are added to the alignment.
Raised here for traceability.
Launching JalviewJS with a URL like
file:///Users/gmcarstairs/git/jalview3/build/jalviewjs/site/jalview_bin_Jalview.html?open examples/uniref50.fa annotations /examples/plantfdx.annotations
or
https://builds.jalview.org/artifact/JB-GJB0/shared/build-57/JalviewJS-site/jalview_bin_Jalview.html?open examples/uniref50.fa annotations /examples/plantfdx.annotations
fails to load the annotations to the alignment correctly.
Instead the file is processed as Pfam and 'sequences' named 'NO_GRAPH' and 'COLOUR' are added to the alignment.