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  1. Jalview
  2. JAL-3589

Fetch from PDB fails in JalviewJS

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.11.1_js
    • Component/s: jalview-j2s
    • Labels:
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      Description

      Branch Jalview-JS/develop, transpiler 3.2.9-j11.
      Load uniref50.fa, right-click on FER1_SPIOL, 3D Structure Data, choose 1a70 from the search results list and New View to retrieve.
      Fails with the console showing
      JSUtil caching 114565 bytes for TEMP/jalview2031789649.cif
      TypeError: tmpFile is null
      @swingjs/j2s/jalview/ws/dbsources/Pdb.js:50:1
      @swingjs/j2s/jalview/gui/AppJmol.js:284:18
      @swingjs/j2s/jalview/gui/AppJmol.js:148:16

      Fetching directly from PDB (via File | Fetch Sequences) gives the same error.

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            Assignee:
            gmungoc Mungo Carstairs
            Reporter:
            gmungoc Mungo Carstairs
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              Dates

              Created:
              Updated: