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  1. Jalview
  2. JAL-3561

can't export alignment file to different format via command line

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.11.0, 2.11.1
    • Fix Version/s: 2.11.1.1
    • Component/s: Command Line Interface
    • Labels:
      None

      Description

      The following command line should translate a fasta file to a stockholm file:

      jalview -nogui open examples/uniref50.fa -stockholm uniref50.stk

      Instead, the file is exported as fasta again!

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          duplicates

          Bug - A problem which impairs or prevents the functions of the product. JAL-3660 Jalview does not honour file format when exporting file as new format via command line

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed
          is duplicated by

          Bug - A problem which impairs or prevents the functions of the product. JAL-3662 Jalview args CLI skips last format and outputs multiple files with input format

          • Major - Major loss of function.
          • Being documented

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: