Details
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Type: Task
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Status: Open
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Priority: Minor
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Component/s: file format issue
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Labels:None
Description
The bio.tools entry for Jalview (https://bio.tools/Jalview) is missing some file formats that Jalview is able to read because they don't (appear to) have an entry in the "format" branch of the EDAM ontology (http://edamontology.org/ browse at https://ifb-elixirfr.github.io/edam-browser/).
These should be submitted to EDAM for inclusion, and subsequently added to the bio.tools record.
The missing formats are:
AMSA (.amsa)
JnetFile (.concise, .jnet)
PFAM (.pfam) [PFAM is in EDAM as a data concept, not as a format]
Substitution matrix (.matrix)
Also worth considering submitting (though possibly a bit application specific!):
Jalview Project File (.jvp)
Jalview Annotations File (.annotations, .jvannotations)
Jalview Features (.features, .jvfeatures)
These should be submitted to EDAM for inclusion, and subsequently added to the bio.tools record.
The missing formats are:
AMSA (.amsa)
JnetFile (.concise, .jnet)
PFAM (.pfam) [PFAM is in EDAM as a data concept, not as a format]
Substitution matrix (.matrix)
Also worth considering submitting (though possibly a bit application specific!):
Jalview Project File (.jvp)
Jalview Annotations File (.annotations, .jvannotations)
Jalview Features (.features, .jvfeatures)
Attachments
Issue Links
- related with
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JAL-4243 bio.tools record accompanying Jalview source code
- Closed