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  1. Jalview
  2. JAL-3545

Some file formats need to be submitted to EDAM ontology to allow their entry into bio.tools

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    Details

    • Type: Task
    • Status: Open
    • Priority: Minor
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: file format issue
    • Labels:
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      Description

      The bio.tools entry for Jalview (https://bio.tools/Jalview) is missing some file formats that Jalview is able to read because they don't (appear to) have an entry in the "format" branch of the EDAM ontology (http://edamontology.org/ browse at https://ifb-elixirfr.github.io/edam-browser/).

      These should be submitted to EDAM for inclusion, and subsequently added to the bio.tools record.

      The missing formats are:

      AMSA (.amsa)
      JnetFile (.concise, .jnet)
      PFAM (.pfam) [PFAM is in EDAM as a data concept, not as a format]
      Substitution matrix (.matrix)

      Also worth considering submitting (though possibly a bit application specific!):
      Jalview Project File (.jvp)
      Jalview Annotations File (.annotations, .jvannotations)
      Jalview Features (.features, .jvfeatures)

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            Assignee:
            soares Ben Soares
            Reporter:
            soares Ben Soares
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              Dates

              Created:
              Updated: