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  1. Jalview
  2. JAL-3499

Create features by matching multiple sequence motifs

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    Details

    • Type: New Feature
    • Status: Ready for testing
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.0
    • Fix Version/s: 2.12.0
    • Component/s: find, sequencefeatures
    • Labels:
      None

      Description

      From http://www.jalview.org/pipermail/jalview-discuss/2019-December/001580.html
      Would like the ability to create multiple different sequence features for regions matching multiple sequence motifs.

        Attachments

        1. features.txt
          0.4 kB
          Mungo Carstairs
        2. groovyMotifs.txt
          1.0 kB
          Mungo Carstairs
        3. motifs.txt
          0.1 kB
          Mungo Carstairs

          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-684 save search expressions so they can be quickly reapplied for new alignments

          • Major - Major loss of function.
          • Open
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-4432 Groovy script stopped working with import error

          • Major - Major loss of function.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. JAL-2406 Import output from the MEME suite

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated: