Details
- 
    Type:
Bug
 - 
    Status: Open
 - 
    Priority:
Critical
 - 
    Resolution: Unresolved
 - 
    Affects Version/s: 2.11.1
 - 
    Fix Version/s: 2.11.1
 - 
    Component/s: data retrieval services, variants
 - 
    Labels:
 
Description
                    In 2.11.1
- retrieve the uniprot sequences found by the following query (gene:BACE2 OR gene:BACE1) AND reviewed:yes
These are
BACE1_HUMAN
BACE1_MOUSE
BACE1_RAT
BACE1_CAVPO
BACE1_BOVIN
BACE2_HUMAN
BACE2_MOUSE
BACE2_RAT
-- however, trying these on there own seem to not result in the bug happening...
- retrieve crossrefs to Ensembl (this takes a while)
Mouse over the CDS sequences - most will have a Species:Chromosome dbref, but one mouse or human sequence (so far in my testing) seem to only get the chromosome number, not the species.
I don't see this problem with a smaller number of sequences, suggesting there may be a race condition somewhere in the ensembl fetcher in the vicinity of the Locus construction code.
- retrieve the uniprot sequences found by the following query (gene:BACE2 OR gene:BACE1) AND reviewed:yes
These are
BACE1_HUMAN
BACE1_MOUSE
BACE1_RAT
BACE1_CAVPO
BACE1_BOVIN
BACE2_HUMAN
BACE2_MOUSE
BACE2_RAT
-- however, trying these on there own seem to not result in the bug happening...
- retrieve crossrefs to Ensembl (this takes a while)
Mouse over the CDS sequences - most will have a Species:Chromosome dbref, but one mouse or human sequence (so far in my testing) seem to only get the chromosome number, not the species.
I don't see this problem with a smaller number of sequences, suggesting there may be a race condition somewhere in the ensembl fetcher in the vicinity of the Locus construction code.