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  1. Jalview
  2. JAL-348

Define sequence mappings and propagate references using pairwise alignment

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Minor
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: Feature Request
    • Labels:
      None
    • Mantis ID:
      36006

      Description

      The 'Fetch DBRefs' mechanism often fails when a source of an alignment uses a sequence that is different to the one reported by the sequence databases. When one simply wants to view information mapped onto that sequence, it would be nice to retrieve the correct reference sequence and generate a map from the reference sequence to the one in the alignment using the 'paiwise alignment' dialog.

      GUI Modification: add a 'transfer reference annotation' or 'create reference mapping' function to the 'Pairwise Alignment viewer' dialog that adds a mapping from the reference sequence to the aligned sequence.

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            Assignee:
            Unassigned Unassigned
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated: