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  1. Jalview
  2. JAL-3475

Maintain and update beta test links for JalviewJS

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    Details

    • Type: Task
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.1
    • Fix Version/s: 2.11.1_js
    • Component/s: jalview-j2s
    • Labels:
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      Description

      Issue for beta testers to track progress with JalviewJS - Please hit the 'Watch' link on the right to follow activity on this issue !

      Latest instructions are:

      Link for demo of JalviewJS embedded example:
      https://builds.jalview.org/browse/JB-JB3/latest/artifact/shared/jalviewjs/jalview_embedded_example1.html

      Embedding currently works by adding specially named divs on the page which JalviewJS locates and
      inserts the contents of various windows. This is very much a proof of concept -- we needs lots of feedback from javascript natives about whether this is a sensible way to go.

      To get JalviewJS on your own site then in principle, all you need to do is extract the tarball for JalviewJS linked to below to a directory and add the necessary Javascript includes.

      https://builds.jalview.org/browse/JB-JB3/latest/artifact/shared/jalviewjs-site.tar.gz/site.tar.gz

      The standard JalviewJS desktop page code looks like this:

      <head>...<script src="swingjs/swingjs2.js"></script>
      <script>
      if (!self.SwingJS)alert('swingjs2.js was not found. It needs to be in swingjs folder
      in the same directory as ' + document.location.href)
      Info = {
         code: null,
         main: "jalview.bin.Jalview",
         core: "jvexamplefile",
               width: 850,
               height: 550,
         readyFunction: null,
               serverURL: 'https://chemapps.stolaf.edu/jmol/jsmol/php/jsmol.php&#39;,
               j2sPath: 'swingjs/j2s',
               console:'sysoutdiv',
               allowjavascript: true
      }
      </script>
      </head>
      <body>
      <script>
      SwingJS.getApplet('testApplet', Info)
      getClassList = function(){J2S._saveFile('_j2sclasslist.txt',
      Clazz.ClassFilesLoaded.sort().join('\n'))}
      </script>
      <div style="position:left:900px;top:30px;width:600px;height:300px;">
      <div id="sysoutdiv" style="border:1px solid
      green;width:100%;height:95%;overflow:auto"></div>
      This is System.out. <a href="javascript:testApplet._clearConsole()">clear it</a>
      <br>Add ?j2snocore to URL to see full class list; ?j2sdebug to use uncompressed
      j2s/core files <br><a href="javascript:getClassList()">get _j2sClassList.txt</a>
      </div>

      </body>

      You probably want to have the 'sysoutdiv' hidden or omitted, of course. By default,
      jalview.bin.Jalview via JalviewJS will look at the first argument passed on the URL
      and process it as a Jalview command line.

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated: