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There are still many Thread.sleep calls in JalviewJS. The latest SwingJS-site.zip will call alert() when it hits these as a reminder that they need fixing. To ignore these, just surround the call by /**(at)j2sIgnore */{...}
If this is too much of a hassle, I will turn that back into just a System.out message, but I'd like to keep it this way so that if this is in a while() loop it doesn't create an infinite loop that will not be found.
If this is too much of a hassle, I will turn that back into just a System.out message, but I'd like to keep it this way so that if this is in a while() loop it doesn't create an infinite loop that will not be found.