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  1. Jalview
  2. JAL-3347

Review and Fix Network tests

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    Details

    • Type: Task
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.11.0
    • Fix Version/s: 2.11.1
    • Component/s: Test suite
    • Labels:
      None

      Description

      13 failing tests at 2.11 release. Some are unused code (e.g. RNA View 2D structure retrieval services), others are not.

      Gradle suite > Gradle test > jalview.ws.jabaws.DisorderAnnotExportImport.testDisorderAnnotExport FAILED
          java.lang.AssertionError at DisorderAnnotExportImport.java:180

      Gradle suite > Gradle test > jalview.ws.PDBSequenceFetcherTest.testPdbSeqRetrieve FAILED
          java.lang.AssertionError at PDBSequenceFetcherTest.java:182

      Gradle suite > Gradle test > jalview.ws.PDBSequenceFetcherTest.testRnaSeqRetrieve FAILED
          java.lang.AssertionError at PDBSequenceFetcherTest.java:90

      Gradle suite > Gradle test > jalview.ws.PDBSequenceFetcherTest.testmmCifSeqRetrieve FAILED
          java.lang.AssertionError at PDBSequenceFetcherTest.java:182

      Gradle suite > Gradle test > jalview.ws.dbsources.RemoteFormatTest.testFetchAccession[5](ENSEMBLGENOMES, DDB_G0283883) FAILED
          java.lang.AssertionError at RemoteFormatTest.java:76

      Gradle suite > Gradle test > jalview.structure.StructureSelectionManagerTest.testAssociatedMappingToSubSeq FAILED
          java.lang.AssertionError at StructureSelectionManagerTest.java:438

      Gradle suite > Gradle test > jalview.ext.paradise.TestAnnotate3D.test1GIDbyId FAILED
          java.net.SocketException at TestAnnotate3D.java:62

      Gradle suite > Gradle test > jalview.ext.paradise.TestAnnotate3D.testIdVsContent2GIS FAILED
          java.net.SocketException at TestAnnotate3D.java:70

      Gradle suite > Gradle test > jalview.ext.paradise.TestAnnotate3D.testPDBfileVsRNAML FAILED
          org.apache.http.NoHttpResponseException at TestAnnotate3D.java:120

      Gradle suite > Gradle test > jalview.ws.jabaws.RNAStructExportImport.testRNAStructExport FAILED
          java.lang.AssertionError at RNAStructExportImport.java:247

      Gradle suite > Gradle test > jalview.ws.utils.UrlDownloadClientTest.UrlDownloadTest FAILED
          java.lang.AssertionError at UrlDownloadClientTest.java:46

      Gradle suite > Gradle test > jalview.ws.sifts.SiftsClientTest.getSIFTsFileTest FAILED
          java.lang.AssertionError at SiftsClientTest.java:222

      Gradle suite > Gradle test > jalview.ws.sifts.SiftsClientTest.getSiftsStructureMappingTest FAILED
          java.lang.AssertionError at SiftsClientTest.java:397

      56 tests completed, 13 failed

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          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-3454 file loading with String filename for PDB structure file can fail

          • Trivial - Cosmetic problem like misspelt words or misaligned text.
          • Resolved

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              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: