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  1. Jalview
  2. JAL-3334

missense_variant features propagated via Ensembl onto Uniprot not being automatically coloured red and displayed

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.10.5, 2.11.0
    • Fix Version/s: 2.11.0
    • Component/s: sequencefeatures
    • Labels:
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      Description

      Original problem that spawned JAL-3330.

      In default Jalview install, retrieve a uniprot sequence and show Ensembl cross-references. The CDS/Protein view will not show missense variants, and inspecting feature settings shows missense variants have their string-based default colour of magenta.

      Problem tracked down to USE_FULL_SO=false by default. Solution is to switch to by default using USE_FULL_SO=true.

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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