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  1. Jalview
  2. JAL-3331

Don't repeatedly query Ensembl for products of non-coding transcripts

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      Cross-reference retrieval is slowed dramatically when Jalview queries ensembl for products for transcripts which have none. Once the Ensembl client has encountered a 400 for a query such as:

      Response code 400 for https://rest.ensembl.org/sequence/id/ENST00000481631?type=protein&Accept=application/json&Content-Type=application/json
      No protein product found for ENST00000481631

      The client shouldn't try to request it again. Ideally the ENST.. dbref in this case should be marked as non-coding - either right from the start to avoid the query to begin with, or at least after a 400 response is encountered.

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            Assignee:
            soares Ben Soares
            Reporter:
            jprocter Jim Procter
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              Created:
              Updated: