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  1. Jalview
  2. JAL-3318

Some PDBe headers cause structure selection dialog to raise exceptions

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Duplicate
    • Affects Version/s: 2.10.5, 2.11.0
    • Fix Version/s: 2.11.1
    • Component/s: Structures
    • Labels:
      None

      Description

      Open the structure selection dialog for this sequence:
      >D1MGQ2
      MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR

      Add the 'R Free' column - this value is only present for some X-ray structures.
      Lots of exceptions appear like:
      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at org.violetlib.aqua.AquaTableUI$AquaTablePainter.paintCell(Unknown Source)
      at org.violetlib.aqua.BasicTableUIPainter.paintCells(Unknown Source)
      at org.violetlib.aqua.AquaTableUI$AquaTablePainter.paint(Unknown Source)
      at org.violetlib.aqua.AquaTableUI.paint(Unknown Source)
      at java.desktop/javax.swing.plaf.ComponentUI.update(ComponentUI.java:161)
      at java.desktop/javax.swing.JComponent.paintComponent(JComponent.java:797)
      at java.desktop/javax.swing.JComponent.paint(JComponent.java:1074)
      at java.desktop/javax.swing.JComponent.paintChildren(JComponent.java:907)
      at java.desktop/javax.swing.JComponent.paint(JComponent.java:1083)
      at java.desktop/javax.swing.JViewport.paint(JViewport.java:737)
      at java.desktop/javax.swing.JComponent.paintChildren(JComponent.java:907)
      at java.desktop/javax.swing.JComponent.paint(JComponent.java:1083)
      at java.desktop/javax.swing.JComponent.paintChildren(JComponent.java:907)
      at java.desktop

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          duplicates

          Bug - A problem which impairs or prevents the functions of the product. JAL-2987 Can't view multiple-page results in PDB/Uniprot FTS on Java 10

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-3286 HTTP 431 error response to PDB query if too many structures

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: