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  1. Jalview
  2. JAL-3313

codon consensus text not scaled to fit within consensus histogram

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: 2.10.4, 2.10.5, 2.11.0
    • Fix Version/s: 2.11.1
    • Component/s: Datamodel
    • Labels:

      Description

      Observed on 1.8 and 11 OSX - CDS consensus logo text scaling is wrong so text appears outside the histogram.

      1. Retrieve the Ensembl example ID and show Uniprot products
      2. Ensure show logo is enabled:
      Codon consensus is not scaled correctly with respect to histogram when there are gaps in the peptide alignment (e.g. when only a few transcripts are present) - here the histogram shows 100%, but codons are scaled to fill in proportion to the number of transcripts aligned at that position.

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            Assignee:
            gmungoc Mungo Carstairs
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated: