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  1. Jalview
  2. JAL-3307

Add support for 'pAS' 'sAS' and 'seq' Stockholm file annotation codes

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.12.0
    • Component/s: file format issue
    • Labels:
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      Description

      Importing stockholm files to/from jalview loses data because 'pAS', 'sAS' and 'seq' rows are not recognised annotation types. A warning is also raised when Pfam alignments with these annotations are imported to Jalview.

      https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2025603/

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated: