Details
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Type:
Bug
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Status: Closed
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Priority:
Major
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Resolution: Fixed
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Affects Version/s: None
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Fix Version/s: 2.4
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Component/s: None
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Labels:None
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Mantis ID:31025
Description
Daron Handley and Reiko Yamashita discovered and fixed a bug relating to the use of the applet in a page like so :
<applet code="jalview.bin.JalviewLite" width="100" height="40"
archive="jalviewApplet.jar" name="Jalview">
<param name="sequence1" value="2czlA ALRLGFSPPNDTFIFYALVHGRVESPVPLEPVLEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRSGGALGRGVGPLVVARGPLQALEGLRVAVPGRHTTAYFLLSLYAQGFVPVEVRYDRILPMVAQGEVEAGLIIHESRFTYPRYGLVQVVDLGAWWEERTGLPLPLGAILARRDLGEGLIRALDEAVRRSVAYALAHPEEALDYMRAHAQELSDEVIWAHVHTYVNAFSLDVGEEGERAVARLFAEAEARGLAAPSPRPLFV">
<param name="wrap" value="true">
<param name="features" value="tmp/2czlAFeat.txt">
<param name="annotations" value="tmp/2czlAAnnot.txt">
<param name="embedded" value="false">
<param name="showConsensus" value="false">
<param name="showQuality" value="false">
<param name="showConservation" value="false">
</applet>
this page was in the top root of the server, and the annotations and features file within a directory called tmp below this. The sequence would be loaded in fine, but no annotations or features were imported, and no errors were given.
<applet code="jalview.bin.JalviewLite" width="100" height="40"
archive="jalviewApplet.jar" name="Jalview">
<param name="sequence1" value="2czlA ALRLGFSPPNDTFIFYALVHGRVESPVPLEPVLEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRSGGALGRGVGPLVVARGPLQALEGLRVAVPGRHTTAYFLLSLYAQGFVPVEVRYDRILPMVAQGEVEAGLIIHESRFTYPRYGLVQVVDLGAWWEERTGLPLPLGAILARRDLGEGLIRALDEAVRRSVAYALAHPEEALDYMRAHAQELSDEVIWAHVHTYVNAFSLDVGEEGERAVARLFAEAEARGLAAPSPRPLFV">
<param name="wrap" value="true">
<param name="features" value="tmp/2czlAFeat.txt">
<param name="annotations" value="tmp/2czlAAnnot.txt">
<param name="embedded" value="false">
<param name="showConsensus" value="false">
<param name="showQuality" value="false">
<param name="showConservation" value="false">
</applet>
this page was in the top root of the server, and the annotations and features file within a directory called tmp below this. The sequence would be loaded in fine, but no annotations or features were imported, and no errors were given.